Last modified 10 Feb 2009

Publications

'Work. Finish. Publish.' - Faraday's advice to researchers.

Some Statistics

Erdös number = 3

Journals I've published in more than once No. of papers
Physcal Review Letters 4
EPL (Europhysics Letters) 3
Physcal Review 3
Physica 3
Bioinformatics 2

Submitted Papers

Dynamics of network motifs,
T. M. A. Fink, E. Barillot and S. E. Ahnert.

Address reduction blindly identifies non-random data series,
T. M. A. Fink, F. C. S. Brown, K. Willbrand and S. E. Ahnert.

Published Papers

When are cellular automata random?,
J. B. Coe, S. E. Ahnert and T. M. A. Fink,
EPL (Europhysics Letters), 84, 50005 (2008).

Clustering signature classifies directed networks,
S. E. Ahnert and T. M. A. Fink,
Physical Review E 78, 036112 (2008).

Single elimination competition,
T. M. A. Fink, J. B. Coe and S. E. Ahnert,
EPL (Europhysics Letters), 83, 60010 (2008).

Applying weighted network measures to distance matrices,
S. E. Ahnert, D. Garlaschelli, T. M. A. Fink and G. Caldarelli,
Journal of Physics A, 41, 224011 (2008).

Comparison of pattern detection methods in microarray time series of the segmentation clock,
M.-L. Dequeant, ..., T. M. A. Fink, ..., and O. Pourquie,
PLoS ONE, 3, e2856 (2008).

An ensemble approach to the analysis of weighted networks,
S. E. Ahnert, D. Garlaschelli, and T. M. A. Fink and G. Caldarelli,
Physical Review E, 76, 016101 (2007).

How much non-coding DNA do eukaryotes require?,
S. E. Ahnert, T. M. A. Fink and A. Zinovyev,
Journal of Theoretical Biology 252, 587 (2007).

1-D random landscapes and non-random data series,
T. M. A. Fink, K. Willbrand and F. C. S. Brown,
EPL, 79, 38006 (2007).

On arithmetic and asymptotic properties of up-down numbers,
F. C. S. Brown, T. M. A. Fink, K. Willbrand,
Discrete Mathematics, 307, 1722 (2006).

Unbiased pattern detection in microarray data series,
S. E. Ahnert, K. Willbrand, F. C. S. Brown and T. M. A. Fink
Bioinformatics 22, 1471 (2006).

Identifying genes from up-down properties of microarray expression series,
K. Willbrand, F. Radvanyi, J.-P. Nadal, J.-P. Thiery and T. M. A. Fink,
Bioinformatics 21, 3589 (2005).

Characterization of the probabilistic traveling salesman problem,
N. Bowler, T. M. A. Fink and R. C. Ball,
Physical Review E 68, 036703 (2003).

Stochastic annealing,
R. C. Ball, T. M. A. Fink and N. E. Bowler,
Physical Review Letters 91, 030201 (2003).

Protein design depends on the size of the amino acid alphabet,
R. C. Ball and T. M. A. Fink,
Physical Review E, 66, 031902 (2002).

Sequence determination from overlapping fragments: A simple model of whole-genome shotgun sequencing,
B. Derrida and T. M. A. Fink,
Physical Review Letters 88, 068106 (2002).

How many conformations can a protein remember?,
T. M. A. Fink and R. C. Ball,
Physical Review Letters 87, 198103 (2001).

Tie knots, random walks and topology,
T. M. Fink and Y. Mao,
Physica A, 276, 109 (2000).

Designing tie knots by random walks,
T. M. Fink and Y. Mao,
Nature, 398, 31 (1999).

Inverse Protein Folding, Hierarchical Optimisation and Tie Knots,
Thomas M. A. Fink,
Ph.D. Thesis, University of Cambridge (1998).

Efficiency and robustness in inverse protein folding,
T. M. Fink and R. C. Ball,
Physica D 107, 199 (1997).

Exactly solvable hierarchical optimization problem related to percolation,
T. M. Fink and R. C. Ball,
Physical Review Letters 76, 2827 (1996).

Beach cusps as self-organized patterns,
B. T. Werner and T. M. Fink,
Science 260, 968 (1993).

Proceedings

A model for beach cusps as self-organized patterns,
B. T. Werner and T. M. Fink,
EOS 72, 233 (1991).

Books

The Man's Book,
Thomas Fink (Weidenfeld & Nicolson, 2006; Phoenix, 2007; Little, Brown, 2009).
Also available in German, Italian, Russian, Hungarian and Finnish.

The 85 Ways to Tie a Tie,
Thomas Fink and Yong Mao (Fourth Estate, 1999; Broadway, 2001).
Reviewed in Nature, Physics World.
Also available in German, Italian, French, Portuguese, Russian, Japanese and others.

Thesis

Inverse Protein Folding, Hierarchical Optimisation and Tie Knots
Thomas M. A. Fink, Ph.D. Thesis, University of Cambridge (1998).
(prints better than it appears on screen)

Patent

Method of identifying pattern in a series of data ,
T. M. A. Fink, K. Willbrand, S. Ahnert and F. C. S. Brown,
International application no.: PCT/EP2006/009810, USA (2007).

Thomas Fink

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